PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_ABBE06B44.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 556aa    MW: 63174.1 Da    PI: 9.5083
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_ABBE06B44.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.3e-2268158291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            fY+++A++vGF vr+ ++k    ++ + +++++Cs +g+r+e+ k+   + +++r+r++tr+gC+a++ vk+ + ++++++++ ++Hn
  Traes_2AL_ABBE06B44.1  68 FYKAFAHRVGFGVRVGQQKVV--DNVVESKRYMCSSQGFRSEKVKRnvkAANKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHN 153
                            9***************99888..889****************9999787788999********************************* PP

                   FAR1  87 Helap 91 
                            H ++p
  Traes_2AL_ABBE06B44.1 154 HGFVP 158
                            *9875 PP

2FAR174.52.3e-23201291190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            +fY++YA+++GF+vr+ ++k   +++ +  ++f+Cs+eg+r+++ k+  +e+++r+ ++tr+gC+a+++vk  + ++++v++l ++Hn
  Traes_2AL_ABBE06B44.1 201 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDKGKDpsSERKKRNVKVTRCGCNAHIVVKWCSGNTYKVSSLIEHHN 287
                            6****************99887.777799****************9987888889999****************************** PP

                   FAR1  87 Hela 90 
                            H l+
  Traes_2AL_ABBE06B44.1 288 HGLV 291
                            *986 PP

3FAR173.64.3e-23339431191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY++YA+++GFsvr+ + k   +n+ + +++f+Cs+eg+r+e+       +++r+ r++tr+gC+a++ vk+ +d+k+++t+  ++H
  Traes_2AL_ABBE06B44.1 339 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSEKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 425
                            6****************97766.8999****************9887777889999******************************** PP

                   FAR1  86 nHelap 91 
                            nH ++p
  Traes_2AL_ABBE06B44.1 426 NHGFVP 431
                            **9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-2068158IPR004330FAR1 DNA binding domain
PfamPF031018.4E-21201291IPR004330FAR1 DNA binding domain
PfamPF031019.2E-21339431IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MESVTIVQAQ PFAGINSPLP LDEGRLGTPE RDATSMPQPC STSTSESAEE WKPALGMTFE  60
GLEAVEAFYK AFAHRVGFGV RVGQQKVVDN VVESKRYMCS SQGFRSEKVK RNVKAANKKR  120
KREVTRCGCD AHIYVKRCSG NTYKIHSMIE QHNHGFVPPD KLHLIRSNRG ASEKEKVIPE  180
CDEALRPSLG MAFEGLSSAE EFYKSYARHC GFKVRVGQHK LLNKEVVQFK RFMCSREGFR  240
SDKGKDPSSE RKKRNVKVTR CGCNAHIVVK WCSGNTYKVS SLIEHHNHGL VLPDKVTKSK  300
RRVSEKAKNK LSSSLAPECD EALKPSVGMV FEDIGSVEEF YKSYAHHCGF SVRVGQRKLL  360
NNEVVQWKRF MCSREGFRSE KCMGVDDPSR KRKVRKVTRC GCDARIIVKR CTDNKYKITS  420
WIEHHNHGFV PPDKCHLIRS NRQLSDKVKP TVSTHCKAST GTSQANKPDH VSEGRSDNVG  480
CTKRDLQKYH HDLCSKIKNE DAQIFVAQLC RKQQEDSAFF FDCDVDDQGM LVHVFWADAT  540
SRKNYIYFSD MLTFDC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227160.17e-82PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5AVU30.0W5AVU3_WHEAT; Uncharacterized protein
STRINGMLOC_19788.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-28FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]